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101 tools found. |

+— PVEW

zkhanSubmitted 2010/01/15 17:21:05.312

External URL:http://compbio.cs.princeton.edu/pview/

Description:Isotope labeled, label-free, and XIC-based quantification for high resolution LC-ESI-MS/MS data from high resolution QTOF, Orbitrap, and FTICR instruments.

+— PVIEW

zkhanSubmitted 2010/01/15 17:18:11.715

External URL:http://compbio.cs.princeton.edu/pview/

Description:Isotope labeled, label-free, and XIC-based quantification for high resolution LC-ESI-MS/MS data from high resolution QTOF, Orbitrap, and FTICR instruments.

+— WM Ultraflex Raw TOF-MS Parser

WM PCA MS 07 08Submitted 2010/01/14 17:31:22.644

External URL:http://cran.r-project.org/web/packages/WMBrukerPar...

Description:R-based (compass-library independent) parser for Bruker-Ultraflex mass spectra (raw binary data) and instrumental meta-data into R list structures for further s...

+— TOFsPRO: TOF signal processing Matlab toolbox (v.1)

WM PCA MS 07 08Submitted 2009/12/23 10:54:36.298

External URL:http://www.mathworks.com/matlabcentral/fileexchang...

Description:This tool enhances signal detection for broad-mass TOF spectra by accounting for changing peak width and providing peak-shape-dependent filtering capabilities. ...

+— rWMBAT: W&M MS Bayesian analysis R-package

WM PCA MS 07 08Submitted 2009/12/23 10:49:43.830

External URL:http://cran.r-project.org/web/packages/rWMBAT/inde...

Description:R-based version of WMBAT (see for full description). Finds diagnostic features in the spectra of biologic samples by using a Bayesian Network approach.

+— WMBAT: William & Mary MS Bayesian analysis Matlab toolbox

WM PCA MS 07 08Submitted 2009/12/23 10:38:49.343

External URL:http://www.mathworks.com/matlabcentral/fileexchang...

Description:Starting with a group of training data and a given classification (like "disease" or "non-"disease") this function builds a three level Bayesian Network from ma...

+— Protein pilot

roentgenSubmitted 2009/08/14 02:52:43.581

External URL:https://products.appliedbiosystems.com/ab/en/US/ad...

Description:I think this is an important tool for the quantification and statistical validation of multiplex experiments.

+— IRMa

External URL:http://biodev.extra.cea.fr/docs/irma/doku.php

Description:IRMa helps users with the validation of MASCOTÂ® identification results. IRMa reads MASCOTÂ® result and automatically filters identified peptides. All relevant...

+— Skyline

maccossSubmitted 2009/07/02 22:37:13.018

External URL:http://proteome.gs.washington.edu/software/skyline...

Description:Skyline is a Windows client application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM) methods and analyzing the resulting...

+— Software Tool for Researching Annotations of Proteins (STRAP)

cpctoolsSubmitted 2009/06/19 12:33:12.257

External URL:http://sourceforge.net/projects/cpctools/

Description:Software Tool for Researching Annotations of Proteins (STRAP): Open-Source Protein Annotation Software with Data Visualization of Proteins from MS Based Proteom...